@article{Traore2021-vr,

title = {COVID-19 epidemiological, sociological and anthropological  investigation: study protocol for a multidisciplinary mixed  methods research in Burkina Faso},

author = {Isidore Tiandiogo Traor\'{e} and Samiratou Ouedraogo and Dramane Kania and Firmin Nongodo Kabor\'{e} and Blahima Konat\'{e} and Rachel M\'{e}dah and Hermann Badolo and Nathalie Rekeneire and Ariane Mamguem Kamga and Armel Poda and Arnaud Eric Diendere and Boukary Ou\'{e}draogo and Esperance Ou\'{e}draogo and Oumar Billa and Halidou Tinto and Tienhan Sandrine Dabakuyo-Yonli},

doi = {10.1186/s12879-021-06543-4},

issn = {1471-2334},

year  = {2021},

date = {2021-09-03},

urldate = {2021-09-03},

journal = {BMC Infect. Dis.},

volume = {21},

number = {1},

pages = {896},

abstract = {BACKGROUND: The world has high hopes of vaccination against 

 COVID-19 to protect the population, boost economies and return to 

 normal life. Vaccination programmes are being rolled out in high 

 income countries, but the pandemic continues to progress in many 

 low-and middle-income countries (LMICs) despite implementation of 

 strict hygiene measures. We aim to present a comprehensive 

 research protocol that will generate epidemiological, 

 sociological and anthropological data about the COVID-19 epidemic 

 in Burkina Faso, a landlocked country in West Africa with scarce 

 resources. METHODS: We will perform a multidisciplinary research 

 using mixed methods in the two main cities in Burkina Faso 

 (Ouagadougou and Bobo-Dioulasso). Data will be collected in the 

 general population and in COVID-19 patients, caregivers and 

 health care professionals in reference care centers: (i) to 

 determine cumulative incidence of SARS-CoV-2 infection in the 

 Burkinabe population using blood samples collected from randomly 

 selected households according to the WHO-recommended protocol; 

 (ii) develop a score to predict severe complications of COVID-19 

 in persons infected with SARS-CoV-2 using retrospective and 

 prospective data; (iii) perform semi-structured interviews and 

 direct observation on site, to describe and analyze the 

 healthcare pathways and experiences of patients with COVID-19 

 attending reference care centers, and to identify the 

 perceptions, acceptability and application of preventive 

 strategies among the population. DISCUSSION: This study will 

 generate comprehensive data that will contribute to improving 

 COVID-19 response strategies in Burkina Faso. The lessons learned 

 from the management of this epidemic may serve as examples to the 

 country authorities to better design preventive strategies in the 

 case of future epidemics or pandemics. The protocol was approved 

 by the Ministry for Health (N° 2020-00952/MS/CAB/INSP/CM) and the 

 Health Research Ethics Committee in Burkina Faso (N° 2020-8-140).},

note = {© 2021. The Author(s).

PMID: 34479501 

PMCID: PMC8414025},

keywords = {Burkina Faso/epidemiology, Clinical epidemiology, COVID-19, Humans, Predictive score, Prospective Studies, Retrospective Studies, SARS-Cov-2, Sero-epidemiology, Socio-anthropology},

pubstate = {published},

tppubtype = {article}

}

@article{Jaspard2021-bl,

title = {Clinical presentation, outcomes and factors associated with  mortality: A prospective study from three COVID-19 referral  care centres in West Africa},

author = {Marie Jaspard and Mamadou Saliou Sow and Sylvain Juchet and Eric Diender\'{e} and Beatrice Serra and Richard Kojan and Billy Sivahera and Caroline Martin and Moumouni Kinda and Hans-Joerg Lang and Fod\'{e} Bangaly Sako and Fod\'{e} Amara Traor\'{e} and Eudoxie Koumbem and Halidou Tinto and Adama Sanou and Apoline Sondo and Flavien Kabor\'{e} and Joseph Donamou and Jean-Paul-Yassa Guilavogui and Fanny Velardo and Brice Bicaba and Olivier Marcy and Augustin Augier and Sani Sayadi and Armel Poda and Sakoba Keita and Xavier Anglaret and Denis Malvy and COVISTA group},

doi = {10.1016/j.ijid.2021.05.024},

issn = {1878-3511 1201-9712},

year  = {2021},

date = {2021-07-01},

urldate = {2021-07-01},

journal = {Int. J. Infect. Dis.},

volume = {108},

pages = {45--52},

publisher = {Elsevier BV},

abstract = {OBJECTIVES: The overall death toll from COVID-19 in Africa is 

 reported to be low but there is little individual-level evidence 

 on the severity of the disease. This study examined the clinical 

 spectrum and outcome of patients monitored in COVID-19 care 

 centres (CCCs) in two West-African countries. METHODS: Burkina 

 Faso and Guinea set up referral CCCs to hospitalise all 

 symptomatic SARS-CoV-2 carriers, regardless of the severity of 

 their symptoms. Data collected from hospitalised patients by 

 November 2020 are presented. RESULT: A total of 1,805 patients 

 (64% men, median age 41 years) were admitted with COVID-19. 

 Symptoms lasted for a median of 7 days (IQR 4-11). During 

 hospitalisation, 443 (25%) had a SpO2 \< 94% at least once, 237 

 (13%) received oxygen and 266 (15%) took corticosteroids. 

 Mortality was 5% overall, and 1%, 5% and 14% in patients 

 aged \<40, 40-59 and $geq$60 years, respectively. In 

 multivariable analysis, the risk of death was higher in men (aOR 

 2.0, 95% CI 1.1; 3.6), people aged $geq$60 years (aOR 2.9, 

 95% CI 1.7; 4.8) and those with chronic hypertension (aOR 2.1, 

 95% CI 1.2; 3.4). CONCLUSION: COVID-19 is as severe in Africa 

 as elsewhere, and there must be more vigilance for common risk 

 factors such as older age and hypertension.},

note = {Copyright © 2021 The Authors. Published by Elsevier Ltd.. All rights reserved.

PMID: 34000419 

PMCID: PMC8120805},

keywords = {Adult, Aged, Burkina Faso/epidemiology, Comorbidities, COVID-19, Female, Hospitalization, Humans, Male, Mortality, Prospective Studies, Referral and Consultation, SARS-Cov-2, sub-Saharan Africa},

pubstate = {published},

tppubtype = {article}

}

@article{Post2021-zl,

title = {Infection Manager System (IMS) as a new hemocytometry-based  bacteremia detection tool: A diagnostic accuracy study in a  malaria-endemic area of Burkina Faso},

author = {Annelies Post and Berenger Kabor\'{e} and Joel Bognini and Salou Diallo and Palpouguini Lompo and Basile Kam and Natacha Herssens and Fred Opzeeland and Christa E Gaast-de Jongh and Jeroen D Langereis and Marien I Jonge and Janette Rahamat-Langendoen and Teun Bousema and Heiman Wertheim and Robert W Sauerwein and Halidou Tinto and Jan Jacobs and Quirijn Mast and Andre J Ven},

doi = {10.1371/journal.pntd.0009187},

issn = {1935-2735 1935-2727},

year  = {2021},

date = {2021-03-01},

urldate = {2021-03-01},

journal = {PLoS Negl. Trop. Dis.},

volume = {15},

number = {3},

pages = {e0009187},

publisher = {Public Library of Science (PLoS)},

abstract = {BACKGROUND: New hemocytometric parameters can be used to 

 differentiate causes of acute febrile illness (AFI). We 

 evaluated a software algorithm-Infection Manager System 

 (IMS)-which uses hemocytometric data generated by Sysmex 

 hematology analyzers, for its accuracy to detect bacteremia in 

 AFI patients with and without malaria in Burkina Faso. Secondary 

 aims included comparing the accuracy of IMS with C-reactive 

 protein (CRP) and procalcitonin (PCT). METHODS: In a prospective 

 observational study, patients of $geq$ three-month-old (range 3 

 months- 90 years) presenting with AFI were enrolled. IMS, blood 

 culture and malaria diagnostics were done upon inclusion and 

 additional diagnostics on clinical indication. CRP, PCT, viral 

 multiplex PCR on nasopharyngeal swabs and bacterial- and malaria 

 PCR were batch-tested retrospectively. Diagnostic classification 

 was done retrospectively using all available data except IMS, 

 CRP and PCT results. FINDINGS: A diagnosis was affirmed in 549/914 (60.1%) patients and included malaria (n = 191) bacteremia (n = 69), viral infections (n = 145), and malaria-bacteremia co-infections (n = 47). The overall 

 sensitivity, specificity, and negative predictive value (NPV) of 

 IMS for detection of bacteremia in patients of $geq$ 5 years 

 were 97.0% (95% CI: 89.8-99.6), 68.2% (95% CI: 55.6-79.1) 

 and 95.7% (95% CI: 85.5-99.5) respectively, compared to 93.9% 

 (95% CI: 85.2-98.3), 39.4% (95% CI: 27.6-52.2), and 86.7% 

 (95% CI: 69.3-96.2) for CRP at $geq$20mg/L. The sensitivity, 

 specificity and NPV of PCT at 0.5 ng/ml were lower at 

 respectively 72.7% (95% CI: 60.4-83.0), 50.0% (95% CI: 

 37.4-62.6) and 64.7% (95% CI: 50.1-77.6) The diagnostic 

 accuracy of IMS was lower among malaria cases and patients \<5 

 years but remained equal to- or higher than the accuracy of CRP. 

 INTERPRETATION: IMS is a new diagnostic tool to differentiate 

 causes of AFI. Its high NPV for bacteremia has the potential to 

 improve antibiotic dispensing practices in healthcare facilities 

 with hematology analyzers. Future studies are needed to evaluate 

 whether IMS, combined with malaria diagnostics, may be used to 

 rationalize antimicrobial prescription in malaria endemic areas. 

 TRIAL REGISTRATION: ClinicalTrials.gov (NCT02669823) 

 https://clinicaltrials.gov/ct2/show/NCT02669823.},

note = {PMID: 33647009 

PMCID: PMC7951874},

keywords = {Adolescent, Automation, Bacteremia/diagnosis, Burkina Faso, C-Reactive Protein/analysis, Child, Coinfection/diagnosis/microbiology/parasitology, Female, Fever of Unknown Origin/diagnosis, Humans, Infant, Laboratory/methods, Malaria/diagnosis, Male, Preschool, Procalcitonin/analysis, Prospective Studies, Sensitivity and Specificity, Software, Virus Diseases/diagnosis},

pubstate = {published},

tppubtype = {article}

}